Atollic TrueSTUDIO
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Eclipse is a universal customizable IDE, which is also the base for many common commercial IDEs. In order to work with Eclipse and debug with J-Link, you also need to install a toolchain which includes compiler, assembler, linker + GDB (GNU Debugger) for debugging (e.g. GNU Tools for ARM). Moreover, in order to allow hardware debugging on embedded systems via GDB + GDB Server, there is also an Eclipse plugin needed, which enables hardware debugging via GDB (e.g. the CDT plugin). After setting up Eclipse + Plugin, Eclipse will use GDB as debugger where GDB communicates via the GDB protocol with J-Link GDB Server, allowing to debug the target hardware which is connected to a J-Link.
Using J-Link Command Strings
Please refer to Specifying J-Link GDB Server commandline options
Please note that J-Link Command Strings can also be executed from J-Link script files.